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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9362658_9363189_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9362658 - 9363189
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTATATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATCTTTTAACT
Flanking Amino Acid:
ACSNKSGRFTIEEVPGDLTQ
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87
0.83
0.8
85
35
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
69.3
0.68
1.2
77.92
38.5

Associated Gene:

Gene:
GSN
Ensembl Gene ID:
ENSAPLG00000005342
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005623
9350557 - 9364693
14137