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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9363268_9363771_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9363268 - 9363771
Intron Length:
504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTAAAT
Flanking Amino Acid:
DVMILDTWDQVFVWIGKDAQ
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.5
0.53
0.9
66.7
39.3
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
73.7
0.82
1.3
85.63
34

Associated Gene:

Gene:
GSN
Ensembl Gene ID:
ENSAPLG00000005342
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005623
9350557 - 9364693
14137