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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9366811_9367646_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9366811 - 9367646
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTCCATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATTAATT
Flanking Amino Acid:
AEAAREARAKVIAAEGEMNA
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.6
0.58
0.8
67
38.9
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
66.3
0.59
1.7
85
34.8

Associated Gene:

Gene:
STOM
Ensembl Gene ID:
ENSAPLG00000006085
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006319
9366181 - 9378453
12273