Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9368516_9371306_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9368516 - 9371306

Intron Length:

2791

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CGTTGCTTTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

GTATGCTTAATT

Flanking Amino Acid:

TISFDIPPQEILTKDSVTVN

Intron Amino Acid Position:

103

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.7

1.1

0.7

87.9

29.3

Major BPS

84.7

0.86

74.3

40.7

Major PPT

76.4

0.59

0.9

73.4

37.1

Minor 5ss

43.8

-0.7

2.8

57.8

46.8

Minor BPS

68.4

0.66

1.8

81.66

39.9

Associated Gene:

Gene:

STOM

Ensembl Gene ID:

ENSAPLG00000006085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006319

9366181 - 9378453

12273