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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9371390_9372282_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9371390 - 9372282
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTTTTGTACA
Flanking Amino Acid:
GRIRGGAKGPGLFFALPCTD
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
77.1
37.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
90.7
0.92
0.8
87.5
30
Minor 5ss
42.9
-0.8
2.8
59.8
44.7
Minor BPS
58.3
0.25
1.8
75.26
35.8

Associated Gene:

Gene:
STOM
Ensembl Gene ID:
ENSAPLG00000006085
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006319
9366181 - 9378453
12273