About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_951164_959496_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
951164 - 959496

Intron Length:
8333

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTATCTCTC

5'SS Class:
major

3'SS Sequence:
TTTCTCTTTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
ATCTAAG

U12 Branch Point Sequence:
TCAGATCTAAGT

Flanking Amino Acid:
CFQTHVRAHRDTEAASGEGA

Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.1
0.57
1.2
68.8
42.3

Major BPS
61.8
0.29
1.5
69.7
35.5

Major PPT
92.7
0.96
0.6
88.4
21.2

Minor 5ss
51.5
0.05
2.4
70.5
39.9

Minor BPS
42.2
-0.5
2.1
57.86
45

Associated Gene:

Gene:
ZNF618

Ensembl Gene ID:

Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

912137 - 969644
57508