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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_95743_96242_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95743 - 96242
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
GGTCCTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAC
U12 Branch Point Sequence:
CACTCCCAGACA
Flanking Amino Acid:
GPSDKISQLEKSLPSSWRSL
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
78.2
31.2
Major BPS
47.2
-0.1
1
52.2
32.7
Major PPT
67.1
0.39
0.9
58.2
38.4
Minor 5ss
27.1
-2.6
3
33
42.4
Minor BPS
46.3
-0.3
2
55.74
43.4

Associated Gene:

Gene:
ABCA2
Ensembl Gene ID:
ENSAPLG00000002548
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002789
72667 - 112105
39439
ENSAPLT00000036122
70053 - 112105
42053
ENSAPLT00000025674
72667 - 112105
39439
ENSAPLT00000017929
72667 - 112105
39439