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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9578013_9580533_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9578013 - 9580533
Intron Length:
2521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTATGTTTCATT
Flanking Amino Acid:
EMKQRTMHKQAPSPVNPNAL
Intron Amino Acid Position:
792

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.8
0.67
0.8
74.8
34.7
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
48.1
-0
2.1
68.89
42.7

Associated Gene:

Gene:
DAB2IP
Ensembl Gene ID:
ENSAPLG00000015053
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015722
9558088 - 9587087
29000
ENSAPLT00000047225
9558088 - 9585629
27542