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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_959575_962204_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
959575 - 962204
Intron Length:
2630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAATATGGCATT
Flanking Amino Acid:
IFDRVLRYMSGSYECGICGK
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75.8
33.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
89.8
0.89
0.7
87.9
29.4
Minor 5ss
40.6
-1.1
3.2
54.1
45.6
Minor BPS
36.6
-0.9
2.3
55.53
40.7

Associated Gene:

Gene:
ZNF618
Ensembl Gene ID:
ENSAPLG00000023828
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034631
912137 - 969644
57508