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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9639003_9639368_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9639003 - 9639368
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAC
5'SS Class:
major
3'SS Sequence:
TATTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
63
38.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.6
0.98
0.6
92.5
25.6
Minor 5ss
36
-1.6
3.4
49.9
46.7
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
TTLL11
Ensembl Gene ID:
ENSAPLG00000015039
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015664
9630031 - 9639465
9435