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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9807052_9807676_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9807052 - 9807676
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGGG
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GCGGCACTGACT
Flanking Amino Acid:
RDTLMRLVLTVRANLIPSPP
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
55
44.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
85.4
0.8
0.7
77
31.7
Minor 5ss
22.1
-3.2
3.4
28.8
43.7
Minor BPS
43.9
-0.4
2
57.69
45

Associated Gene:

Gene:
PTGS1
Ensembl Gene ID:
ENSAPLG00000014313
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014934
9806583 - 9810944
4362