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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9809598_9810296_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9809598 - 9810296
Intron Length:
699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGTCC
5'SS Class:
major
3'SS Sequence:
TCTCATCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTCTTCTCATCC
Flanking Amino Acid:
ESFSKQTAGMIGGGQTINAN
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.3
35
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79
0.65
0.8
69.8
36.3
Minor 5ss
32.7
-2
3.2
39.1
40.7
Minor BPS
50.5
-0
1.8
62.83
42.7

Associated Gene:

Gene:
PTGS1
Ensembl Gene ID:
ENSAPLG00000014313
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014934
9806583 - 9810944
4362