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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9821429_9821605_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9821429 - 9821605
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATGTGCT
5'SS Class:
major
3'SS Sequence:
TCTCTGCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACAACCTGAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.3
71.5
38.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.8
0.65
0.8
69.5
36.8
Minor 5ss
42.8
-0.8
3.1
57.9
40.1
Minor BPS
53.5
0.19
1.6
66.89
42.8

Associated Gene:

Gene:
PDCL
Ensembl Gene ID:
ENSAPLG00000014180
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032126
9815922 - 9821732
5811