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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9821429_9821954_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9821429 - 9821954
Intron Length:
526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TCTCTGCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ACAACCTGAAAT
Flanking Amino Acid:
PARTGAASAGGFVGSLFLRD
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
55.1
43.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.8
0.65
0.8
69.5
36.8
Minor 5ss
23.7
-3
3.3
29.1
43.5
Minor BPS
53.5
0.19
1.6
66.89
42.8

Associated Gene:

Gene:
PDCL
Ensembl Gene ID:
ENSAPLG00000014180
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014775
9818283 - 9822258
3976