Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9830590_9831109_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9830590 - 9831109

Intron Length:

520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTATGGACT

5'SS Class:

major

3'SS Sequence:

TTTTCTCTTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTGCTTTTAATT

Flanking Amino Acid:

DSTSSARYAERDRFIVTDLS

Intron Amino Acid Position:

968

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

69.1

41.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

81.5

0.71

0.9

82.7

26.4

Minor 5ss

41.5

-0.9

3.1

45.3

Minor BPS

70.5

0.72

1.2

80.41

Associated Gene:

Gene:

RC3H2

Ensembl Gene ID:

ENSAPLG00000013920

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036581

9826429 - 9844074

17646

ENSAPLT00000022596

9826296 - 9844074

17779

ENSAPLT00000014540

9826296 - 9844074

17779