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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9831195_9831395_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9831195 - 9831395
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAGTA
5'SS Class:
major
3'SS Sequence:
TAAATTGTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ATATCTTAAATT
Flanking Amino Acid:
GSATKPISVSDYVPYVNAVD
Intron Amino Acid Position:
940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.7
36.4
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
68.2
0.41
1
61.7
44
Minor 5ss
32.3
-2
3.7
47
48.4
Minor BPS
65
0.55
1.6
78.82
37.8

Associated Gene:

Gene:
RC3H2
Ensembl Gene ID:
ENSAPLG00000013920
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036581
9826429 - 9844074
17646
ENSAPLT00000022596
9826296 - 9844074
17779
ENSAPLT00000014540
9826296 - 9844074
17779