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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9831610_9833875_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9831610 - 9833875
Intron Length:
2266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGAAGC
5'SS Class:
major
3'SS Sequence:
CTTAAATACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAAAT
Flanking Amino Acid:
PLFSVDFSTEDLDSGDVKRR
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
65.9
40.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
61.1
0.25
1
54.7
39.2
Minor 5ss
27
-2.6
3
34.1
41.6
Minor BPS
78.9
0.99
1.2
89.96
33.4

Associated Gene:

Gene:
RC3H2
Ensembl Gene ID:
ENSAPLG00000013920
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022596
9826296 - 9844074
17779