About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9834047_9834505_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9834047 - 9834505
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTATCTTTATTA
Flanking Amino Acid:
NEQRTVPLPREPCGHLKTGY
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
71.8
0.49
1
66.9
43.9
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
60.9
0.34
1.6
67.51
39.7

Associated Gene:

Gene:
RC3H2
Ensembl Gene ID:
ENSAPLG00000013920
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022596
9826296 - 9844074
17779
ENSAPLT00000014540
9826296 - 9844074
17779
ENSAPLT00000036581
9826429 - 9844074
17646