Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9838542_9838778_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9838542 - 9838778

Intron Length:

237

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCAAA

5'SS Class:

strong_major

3'SS Sequence:

TTAATAATTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTAATAATT

Flanking Amino Acid:

ELLANIDPNPDAASPTWEQL

Intron Amino Acid Position:

365

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

75.9

35.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

71.2

0.48

68.1

42.1

Minor 5ss

44.8

-0.6

2.6

56.7

47.6

Minor BPS

62.1

0.46

1.8

85.83

33.8

Associated Gene:

Gene:

RC3H2

Ensembl Gene ID:

ENSAPLG00000013920

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014540

9826296 - 9844074

17779

ENSAPLT00000036581

9826429 - 9844074

17646

ENSAPLT00000022596

9826296 - 9844074

17779