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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9839503_9840445_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9839503 - 9840445
Intron Length:
943

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
CGCTGTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTTTACATATCG
Flanking Amino Acid:
QLLYRASCFKVTKRDEDSSL
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
67
0.38
1
66
39.7
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
48.4
-0.2
2.1
62.59
44.5

Associated Gene:

Gene:
RC3H2
Ensembl Gene ID:
ENSAPLG00000013920
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036581
9826429 - 9844074
17646
ENSAPLT00000022596
9826296 - 9844074
17779
ENSAPLT00000014540
9826296 - 9844074
17779