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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9842367_9843777_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9842367 - 9843777
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TGCGTTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTTTCTACCC
Flanking Amino Acid:
FALLQLVGAQVPDHQTVKLS
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.6
0.62
0.9
72.8
37.5
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
55.4
0.15
1.9
74.1
37

Associated Gene:

Gene:
RC3H2
Ensembl Gene ID:
ENSAPLG00000013920
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036581
9826429 - 9844074
17646
ENSAPLT00000022596
9826296 - 9844074
17779
ENSAPLT00000014540
9826296 - 9844074
17779