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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9878625_9880299_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9878625 - 9880299
Intron Length:
1675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGATT
5'SS Class:
major
3'SS Sequence:
TGGTAAATAACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
IKEDDGKGYFSAVPKDKDRQ
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
77.5
36.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
59.7
0.22
1.1
52.5
44.8
Minor 5ss
43.6
-0.7
3.3
65.5
45.8
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
RABGAP1
Ensembl Gene ID:
ENSAPLG00000006937
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007282
9869417 - 9928999
59583