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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9880411_9881540_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9880411 - 9881540
Intron Length:
1130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TGCAGATTAATT
Flanking Amino Acid:
QTTNKELAIERCFGLLLSRG
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
82.3
0.73
0.9
76.3
37.7
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
48.1
-0
2
66.53
44.1

Associated Gene:

Gene:
RABGAP1
Ensembl Gene ID:
ENSAPLG00000006937
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007282
9869417 - 9928999
59583