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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9881608_9883137_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9881608 - 9883137
Intron Length:
1530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTGCATTAAAA
Flanking Amino Acid:
RSGDMHLLDLESMGKSSDGK
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
78.7
35.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.9
0.76
0.8
75.9
38
Minor 5ss
37
-1.5
3.3
48.9
41.6
Minor BPS
58.2
0.25
1.8
70.99
40.5

Associated Gene:

Gene:
RABGAP1
Ensembl Gene ID:
ENSAPLG00000006937
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007282
9869417 - 9928999
59583