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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9911039_9912527_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9911039 - 9912527
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCTTT
5'SS Class:
weak_major
3'SS Sequence:
ATTCCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TATGCTGTAAAA
Flanking Amino Acid:
GQDSLYKICKAYSVYDEEIG
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
73.3
38.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
83
0.74
0.7
81.5
29.7
Minor 5ss
70.8
0.7
2.2
82.3
37.4
Minor BPS
48.8
-0
2.2
65.36
41.2

Associated Gene:

Gene:
RABGAP1
Ensembl Gene ID:
ENSAPLG00000006937
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007282
9869417 - 9928999
59583