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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9912603_9914520_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9912603 - 9914520
Intron Length:
1918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTCCTCTCACA
Flanking Amino Acid:
SFLAAVLLLHMPEEQAFSVL
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
78.2
36.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
85
0.79
0.7
79.9
25.5
Minor 5ss
36.8
-1.5
3.4
53.8
43.7
Minor BPS
52.4
0.07
2.1
73.45
38.3

Associated Gene:

Gene:
RABGAP1
Ensembl Gene ID:
ENSAPLG00000006937
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007282
9869417 - 9928999
59583