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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9915405_9917001_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9915405 - 9917001
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTAATTTATCT
Flanking Amino Acid:
FHIIDLLLCEGISVIFNVAL
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
85.4
31.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
90
0.9
0.6
89.8
18.6
Minor 5ss
37.6
-1.4
3.6
57.9
46.7
Minor BPS
55.2
0.24
1.8
76.22
40.2

Associated Gene:

Gene:
RABGAP1
Ensembl Gene ID:
ENSAPLG00000006937
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007282
9869417 - 9928999
59583