Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9917533_9921168_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9917533 - 9921168

Intron Length:

3636

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGATG

5'SS Class:

strong_major

3'SS Sequence:

TGCTTTAATTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

GCTGCTTTAATT

Flanking Amino Acid:

KLMELACNMKISQKKLKKYE

Intron Amino Acid Position:

809

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

75.8

39.8

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

72.3

0.5

0.9

71.1

38.8

Minor 5ss

35.2

-1.7

3.3

47.8

47.9

Minor BPS

67.9

0.64

1.4

75.88

41.7

Associated Gene:

Gene:

RABGAP1

Ensembl Gene ID:

ENSAPLG00000006937

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007282

9869417 - 9928999

59583