Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9957441_9959493_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9957441 - 9959493

Intron Length:

2053

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTATATTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

CATTCCCCATCT

Flanking Amino Acid:

AAAATGYITPGYGAPYGYST

Intron Amino Acid Position:

631

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.9

78.6

37.2

Major BPS

79.2

0.73

75.3

39.4

Major PPT

80.7

0.69

0.9

74.3

39.8

Minor 5ss

32.4

-2

3.4

46.7

48.6

Minor BPS

47.7

-0.1

2.1

70.46

45.8

Associated Gene:

Gene:

STRBP

Ensembl Gene ID:

ENSAPLG00000006350

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006643

9943336 - 9985832

42497

ENSAPLT00000029795

9954241 - 9985832

31592

ENSAPLT00000023866

9950995 - 9985832

34838