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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9961432_9962000_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9961432 - 9962000
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTAATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CATATCTTAATT
Flanking Amino Acid:
GSHDKRFVMEVEVDGQKFRG
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
84.4
0.77
0.8
81.4
34.9
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
69.4
0.69
1.3
77.33
39.4

Associated Gene:

Gene:
STRBP
Ensembl Gene ID:
ENSAPLG00000006350
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028806
9954250 - 9985662
31413
ENSAPLT00000023866
9950995 - 9985832
34838
ENSAPLT00000006643
9943336 - 9985832
42497
ENSAPLT00000048187
9950995 - 9985832
34838
ENSAPLT00000029795
9954241 - 9985832
31592