About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9962136_9963096_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9962136 - 9963096
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
AATGTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
AACACCATAAAT
Flanking Amino Acid:
STSDTSTTLEVRTQGPILTA
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
73
0.57
1
73.6
28.6
Major PPT
65.7
0.35
1
55.6
44.9
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
50.7
0.1
1.8
67.26
42.5

Associated Gene:

Gene:
STRBP
Ensembl Gene ID:
ENSAPLG00000006350
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023866
9950995 - 9985832
34838
ENSAPLT00000006643
9943336 - 9985832
42497
ENSAPLT00000048187
9950995 - 9985832
34838
ENSAPLT00000029795
9954241 - 9985832
31592
ENSAPLT00000028806
9954250 - 9985662
31413