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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9968981_9969735_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9968981 - 9969735
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TAATGTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTAATCATAATT
Flanking Amino Acid:
VPTWAPLKGWPLELICEKSI
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
80.7
33.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.8
0.49
0.9
62.9
43.6
Minor 5ss
35.6
-1.6
2.6
35.6
40.5
Minor BPS
53.9
0.2
1.7
70.07
41

Associated Gene:

Gene:
STRBP
Ensembl Gene ID:
ENSAPLG00000006350
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023866
9950995 - 9985832
34838
ENSAPLT00000006643
9943336 - 9985832
42497
ENSAPLT00000048187
9950995 - 9985832
34838
ENSAPLT00000029795
9954241 - 9985832
31592
ENSAPLT00000028806
9954250 - 9985662
31413