Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9969832_9970257_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9969832 - 9970257

Intron Length:

426

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGCTAT

5'SS Class:

major

3'SS Sequence:

TTGTTTGTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTGGAA

U12 Branch Point Sequence:

TATATTGGAACC

Flanking Amino Acid:

ASLRHAKWFQARANGLKSCV

Intron Amino Acid Position:

208

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.45

1.2

Major BPS

53.4

0.09

1.4

55.1

42.1

Major PPT

81.9

0.72

0.9

81.2

36.5

Minor 5ss

40.5

-1.1

3.2

55.8

48.5

Minor BPS

-0.3

2.1

60.59

38.5

Associated Gene:

Gene:

STRBP

Ensembl Gene ID:

ENSAPLG00000006350

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028806

9954250 - 9985662

31413

ENSAPLT00000023866

9950995 - 9985832

34838

ENSAPLT00000006643

9943336 - 9985832

42497

ENSAPLT00000048187

9950995 - 9985832

34838

ENSAPLT00000029795

9954241 - 9985832

31592