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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9975950_9978582_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9975950 - 9978582
Intron Length:
2633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGGTGACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GATTCTTGAAAT
Flanking Amino Acid:
VKDNLPVQIQKLTEEKYLVE
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
71.7
0.49
1
66.7
44.1
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
62.6
0.47
1.5
76.65
39.1

Associated Gene:

Gene:
STRBP
Ensembl Gene ID:
ENSAPLG00000006350
Chromosome:
18

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029795
9954241 - 9985832
31592
ENSAPLT00000028806
9954250 - 9985662
31413
ENSAPLT00000023866
9950995 - 9985832
34838
ENSAPLT00000006643
9943336 - 9985832
42497
ENSAPLT00000048187
9950995 - 9985832
34838