Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_18_9978749_9982715_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9978749 - 9982715

Intron Length:

3967

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

ATTTCGTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTAATTACTC

Flanking Amino Acid:

EAEEAAESNAKDQSGRTLCG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

0.9

71.2

34.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

82.6

0.73

0.9

73.6

41.2

Minor 5ss

28.3

-2.5

3.1

31.3

36.6

Minor BPS

52.9

0.07

72.53

38.5

Associated Gene:

Gene:

STRBP

Ensembl Gene ID:

ENSAPLG00000006350

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028806

9954250 - 9985662

31413

ENSAPLT00000023866

9950995 - 9985832

34838

ENSAPLT00000006643

9943336 - 9985832

42497

ENSAPLT00000048187

9950995 - 9985832

34838

ENSAPLT00000029795

9954241 - 9985832

31592