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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10004350_10005029_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10004350 - 10005029
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
AAAAACTTACTT
Flanking Amino Acid:
DRDSYRRILMGSTLRKRKMY
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
1
92.3
24.3
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
83.2
0.75
0.6
78.6
23.1
Minor 5ss
31.5
-2.1
4
48.3
41.8
Minor BPS
48
-0
1.8
62.61
41

Associated Gene:

Gene:
PRKAR1A
Ensembl Gene ID:
ENSAPLG00000008613
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009000
10001112 - 10014472
13361