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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10005873_10006377_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10005873 - 10006377
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTCATT
Flanking Amino Acid:
YIAGETVIQQGDEGDNFYVV
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.7
82.2
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
84
0.77
0.7
82.6
28
Minor 5ss
24.2
-3
3.7
35.6
41
Minor BPS
61.3
0.44
1.7
79.64
37.1

Associated Gene:

Gene:
PRKAR1A
Ensembl Gene ID:
ENSAPLG00000008613
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009000
10001112 - 10014472
13361