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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10012803_10014166_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
10012803 - 10014166
Intron Length:
1364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTTCTCTTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1.1
79.6
34.4
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
83.9
0.76
0.8
81.1
29.7
Minor 5ss
42.8
-0.8
3.2
61.1
43.8
Minor BPS
67.8
0.64
1.6
84.73
36.1

Associated Gene:

Gene:
PRKAR1A
Ensembl Gene ID:
ENSAPLG00000008613
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009000
10001112 - 10014472
13361