Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10014234_10014324_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

10014234 - 10014324

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGTGTGGT

5'SS Class:

major

3'SS Sequence:

TTTTTCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAC

U12 Branch Point Sequence:

CCCTCTCTGACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.1

0.29

1.1

58.2

40.7

Major BPS

69.1

0.47

60.7

37.6

Major PPT

97.2

1.06

0.5

96.4

12.2

Minor 5ss

-1.4

3.3

46.6

Minor BPS

52.8

0.17

1.7

67.08

44.4

Associated Gene:

Gene:

PRKAR1A

Ensembl Gene ID:

ENSAPLG00000008613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009000

10001112 - 10014472

13361