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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10047905_10053407_F

Intron Information:

Intron Rank:
127948
Intron Class:
major
Intron Phase:
Intron Coordinates:
10047905 - 10053407
Intron Length:
5503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
87.3
0.84
0.9
89.9
23.6
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018941
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029688
10047887 - 10054803
6917