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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10073766_10074057_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10073766 - 10074057
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAA
U12 Branch Point Sequence:
AGAGCAGGAATC
Flanking Amino Acid:
RIFPSAARQERFPSLLVYKV
Intron Amino Acid Position:
1549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
83.5
29.8
Major BPS
60.5
0.26
1.3
63.4
44.3
Major PPT
84.6
0.78
0.7
77
31.7
Minor 5ss
34.3
-1.8
2.8
43.1
43.9
Minor BPS
38.1
-0.9
2.1
44.6
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946