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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10074199_10074402_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10074199 - 10074402
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGGCAGC
5'SS Class:
major
3'SS Sequence:
CCCTCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTCACACTGACT
Flanking Amino Acid:
RVAILVAGQLRCIGSIQYLK
Intron Amino Acid Position:
1502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.1
54.4
44.7
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
75.8
0.58
0.7
69
24.8
Minor 5ss
33.4
-1.9
3.2
42.8
44.6
Minor BPS
49.4
0.04
2
74.41
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946