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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10074523_10074944_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10074523 - 10074944
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTAGG
5'SS Class:
major
3'SS Sequence:
TCTGTGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
GMDPKGQRCVWKMIRAALKT
Intron Amino Acid Position:
1462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
61.4
44.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
75.8
0.58
0.9
72.9
37.4
Minor 5ss
28.4
-2.5
2.8
29.7
38
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946