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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10075040_10075295_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10075040 - 10075295
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCATTTT
5'SS Class:
major
3'SS Sequence:
TTCTCTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAC
U12 Branch Point Sequence:
CAGACCTGACCC
Flanking Amino Acid:
RKLSAGITRKLCFAMCMLGN
Intron Amino Acid Position:
1431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
77.4
33.5
Major BPS
60.1
0.25
1
51
35.6
Major PPT
88.7
0.87
0.6
84.5
23.3
Minor 5ss
39
-1.2
3.3
57.9
46.7
Minor BPS
47
-0.2
1.8
53.15
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946