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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10075372_10075990_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10075372 - 10075990
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
CCTTCCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
CCTTCCCCCACA
Flanking Amino Acid:
RKEDTAAAVNRIVNALELQD
Intron Amino Acid Position:
1405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
56.6
42.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
75.2
0.57
0.7
68.6
25.2
Minor 5ss
29
-2.4
3.7
40.8
45.9
Minor BPS
45.5
-0.3
2.3
59.96
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946