Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10077226_10077568_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10077226 - 10077568

Intron Length:

343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAACTG

5'SS Class:

strong_major

3'SS Sequence:

TGCTTGCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

ATATAATAGACT

Flanking Amino Acid:

NAIIAPSQEEKSVIIVSNLC

Intron Amino Acid Position:

1280

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

68.8

42.1

Major BPS

0.72

78.4

31.2

Major PPT

80.3

0.68

0.9

76.9

37.4

Minor 5ss

34.9

-1.7

3.3

47.4

Minor BPS

46.4

-0.2

2.1

68.62

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006948

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007316

10073296 - 10092241

18946