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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10077690_10078167_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10077690 - 10078167
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
ATTCTGTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AATTCTGTGATC
Flanking Amino Acid:
RTVLRKDPVFRISPRNESSH
Intron Amino Acid Position:
1239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
78.9
0.65
0.8
73.6
36.3
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
50.3
-0
2
64.04
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946