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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10078260_10078656_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10078260 - 10078656
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
CTCTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
AGGCTGTTAATG
Flanking Amino Acid:
RNDVLIAVFAPYIHSVGFIF
Intron Amino Acid Position:
1209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
71
34.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86
0.81
0.8
83.8
30.7
Minor 5ss
35
-1.7
3
46.1
42.9
Minor BPS
45.6
-0.4
2
47.25
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946