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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10080446_10080905_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10080446 - 10080905
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTCCT
5'SS Class:
major
3'SS Sequence:
CTTTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTCTCTAATA
Flanking Amino Acid:
SGSIGNIFLLVMGALGYGVS
Intron Amino Acid Position:
1106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
68.2
42.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
35.9
-1.6
3.2
48.1
42.7
Minor BPS
72.4
0.7
1.6
83.86
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007316
10073296 - 10092241
18946