Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_10081077_10081273_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10081077 - 10081273

Intron Length:

197

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTCA

5'SS Class:

strong_major

3'SS Sequence:

TGTGCCTTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

AGCTGGCCAACA

Flanking Amino Acid:

FAMGYLQDYKTGARAQLRVS

Intron Amino Acid Position:

1049

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

80.1

28.4

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

74.6

0.55

0.9

65.5

Minor 5ss

39.8

-1.1

2.8

50.7

45.7

Minor BPS

35.9

-1

2.5

47.37

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000006948

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007316

10073296 - 10092241

18946